Rapid Identification Protocols in bacteria by MALDI-TOF from positive blood cultures. A literature review
DOI:
https://doi.org/10.35839/repis.7.2.1816Palabras clave:
rapid identification, protocols, positive blood cultures, literature review, research work analysisResumen
Objective. To identify protocols for rapid identification of bacteria by MALDI-TOF from positive blood cultures that are as accurate as standardized ones. Methods. A bibliographic review was conducted on experimental articles, systematic reviews, experimental studies, and diagnostic test studies on the rapid identification of bacteria by MALDI-TOF from positive blood cultures. The QUADAS-2 tool was applied to evaluate the risk of bias in the articles. Results. There are various methodologies for the rapid identification of bacteria from positive blood cultures, all with a processing time of no more than one hour and with materials accessible in laboratories. These methodologies, such as Sepsityper and artisanal methods, achieve good accuracy in identifying Gram-negative bacteria, but there are still limitations in identifying Gram-positive bacteria depending on the genus and species of the bacterium. It is important to note that the quality of evidence in most studies is moderate, so the results should be taken with caution. Conclusion. There are several methodologies for rapid identification of bacteria in positive blood cultures, with short processing times and accessible materials in laboratories, that achieve good accuracy in identifying Gram-negative bacteria but have limitations in identifying Gram-positive bacteria. The quality of evidence is moderate, indicating that further studies with better design and higher quality and certainty results are needed to draw inferences obtained.
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Sterling SA, Miller WR, Pryor J, Puskarich MA, Jones AE. The Impact of Timing of Antibiotics on Outcomes in Severe Sepsis and Septic Shock: A Systematic Review and Meta-analysis. Crit Care Med. 2015;43(9):1907-15. doi: 10.1097/CCM.0000000000001142
Ruiz-Aragón J, Ballestero-Téllez M, Gutiérrez-Gutiérrez B, de Cueto M, Rodríguez-Baño J, Pascual Á. Direct bacterial identification from positive blood cultures using matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF) mass spectrometry: A systematic review and meta-analysis. Enferm Infecc Microbiol Clin (Engl Ed). 2018;36(8):484-92. doi: 10.1016/j.eimc.2017.08.012
Oviaño M., Rodríguez B., Caballero J. & Muñoz J. Aplicaciones de la espectrometría de masas MALDI-TOF en Microbiología Clínica. Recomendaciones de la Sociedad Española de Enfermedades Infecciosas y Microbiología Clínica (SEIMC). [Internet]. 2019[citado el 12 de enero de 2022]. Disponible en: https://seimc.org/contenidos/documentoscientificos/procedimientosmicrobiologia/seimc-procedimientomicrobiologia65.pdf
Dai Y, Xu X, Yan X, Li D, Cao W, Tang L, et al. Evaluation of a Rapid and Simplified Protocol for Direct Identification of Microorganisms From Positive Blood Cultures by Using Matrix Assisted Laser Desorption Ionization Time-of-Flight Mass Spectrometry (MALDI-TOF MS). Front Cell Infect Microbiol. 2021;11:632679. doi: 10.3389/fcimb.2021.632679
Huang YL, Sun QL, Li JP, Hu YY, Zhou HW, Zhang R. Evaluation of an in-house MALDI-TOF MS rapid diagnostic method for direct identification of micro-organisms from blood cultures. J Med Microbiol. 2019;68(1):41-7. doi: 10.1099/jmm.0.000866
Yuan Y, Wang J, Zhang J, Ma B, Gao S, Li Y, et al. Evaluation of an optimized method to directly identify bacteria from positive blood cultures using MALDI-TOF mass spectrometry. J Clin Lab Anal. 2020;34(4):e23119. doi: 10.1002/jcla.23119
Fang C, Zhou Z, Li J, Chen X, Zhou M. Rapid identification of microorganisms from positive blood cultures in pediatric patients by MALDI-TOF MS: Sepsityper kit versus short-term subculture. J Microbiol Methods. 2020;172:105894. doi: 10.1016/j.mimet.2020.105894
Hu YL, Hsueh SC, Ding GS, Chuang PC, Chen JM, Lu CY, et al. Applicability of an in-house saponin-based extraction method in Bruker Biotyper matrix-assisted laser desorption/ionization time-of-flight mass spectrometry system for identifying bacterial and fungal species in positively flagged pediatric VersaTREK blood cultures. J Microbiol Immunol Infect. 2020;53(6):916-24. doi: 10.1016/j.jmii.2020.01.004
Wu W, Jiang Y, Zhou W, Liu X, Kuang L. The first case of Ochrobactrum intermedium bacteremia in a pediatric patient with malignant tumor. BMC Infect Dis. 2021;21(1):1252. https://doi.org/10.1186/s12879-021-06938-3
Carretero O, Rivas G, Loras C, Orellana MA. Rapid identification of bacteria directly from positive blood cultures by a modified method using a serum separator tube and matrix-assisted laser desorption ionization - time of flight MS. J Med Microbiol. 2020;69(12):1373-80. doi: 10.1099/jmm.0.001270
Martín-Pujol O, Tosco-Nuñez T, de Miguel-Martinez I. Comparison of three procedures for the rapid identification of bacteraemia-causing microorganisms. Evaluation of their effectiveness and applicability to microbiology laboratories. Enferm Infecc Microbiol Clin (Engl Ed). 2019;37(5):319-23. doi: 10.1016/j.eimc.2018.06.018
Fothergill A, Kasinathan V, Hyman J, Walsh J, Drake T, Wang YFW. Rapid identification of bacteria and yeasts from positive-blood-culture bottles by using a lysis-filtration method and matrix-assisted laser desorption ionization-time of flight mass spectrum analysis with the SARAMIS database. J Clin Microbiol. 2013;51(3):805-9. doi: 10.1128/JCM.02326-12
Mestas J, Felsenstein S, Bard JD. Direct identification of bacteria from positive BacT/ALERT blood culture bottles using matrix-assisted laser desorption ionization-time-of-flight mass spectrometry. Diagn Microbiol Infect Dis. 2014;80(3):193-6. doi: 10.1016/j.diagmicrobio.2014.07.008
Simon L, Ughetto E, Gaudart A, Degand N, Lotte R, Ruimy R. Direct Identification of 80 Percent of Bacteria from Blood Culture Bottles by Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry Using a 10-Minute Extraction Protocol. J Clin Microbiol. 2019;57(2):e01278-18. doi: 10.1128/JCM.01278-18
Ponderand L, Pavese P, Maubon D, Giraudon E, Girard T, Landelle C, et al. Evaluation of Rapid Sepsityper® protocol and specific MBT-Sepsityper module (Bruker Daltonics) for the rapid diagnosis of bacteremia and fungemia by MALDI-TOF-MS. Ann Clin Microbiol Antimicrob. 2020;19(1):60. https://doi.org/10.1186/s12941-020-00403-w
Samaranayake WAMP, Dempsey S, Howard-Jones AR, Outhred AC, Kesson AM. Rapid direct identification of positive paediatric blood cultures by MALDI-TOF MS technology and its clinical impact in the paediatric hospital setting. BMC Res Notes. 2020;13(1):12. https://doi.org/10.1186/s13104-019-4861-4
Foster AGW. Rapid Identification of microbes in positive blood cultures by use of the vitek MS matrix-assisted laser desorption ionization-time of flight mass spectrometry system. J Clin Microbiol. 2013;51(11):3717-9. doi: 10.1128/JCM.01679-13
Barberino MG, Silva M de O, Arraes ACP, Correia LC, Mendes AV. Direct identification from positive blood broth culture by matrix-assisted laser desorption-ionization time-of-flight mass spectrometry (MALDI-TOF MS). Braz J Infect Dis. 2017;21(3):339-42. doi: 10.1016/j.bjid.2017.03.007
Cordovana M, Zignoli A, Ambretti S. Rapid Sepsityper in clinical routine: 2 years' successful experience. J Med Microbiol. 2020;69(12):1398-404. doi: 10.1099/jmm.0.001268
Yonetani S, Ohnishi H, Ohkusu K, Matsumoto T, Watanabe T. Direct identification of microorganisms from positive blood cultures by MALDI-TOF MS using an in-house saponin method. Int J Infect Dis. 2016;52:37-42. doi: 10.1016/j.ijid.2016.09.014
Cattani ME, Posse T, Hermes RL, Kaufman SC. [Rapid identification of microorganisms by mass spectrometry in a blood culture system. Comparison of two procedures]. Rev Argent Microbiol. 2015;47(3):190-5. doi: 10.1016/j.ram.2015.06.001
Jakovljev A, Bergh K. Development of a rapid and simplified protocol for direct bacterial identification from positive blood cultures by using matrix assisted laser desorption ionization time-of- flight mass spectrometry. BMC Microbiol. 2015;15:258. https://doi.org/10.1186/s12866-015-0594-2
Lagacé-Wiens PRS, Adam HJ, Karlowsky JA, Nichol KA, Pang PF, Guenther J, et al. Identification of blood culture isolates directly from positive blood cultures by use of matrix-assisted laser desorption ionization-time of flight mass spectrometry and a commercial extraction system: analysis of performance, cost, and turnaround time. J Clin Microbiol. 2012;50(10):3324-8. doi: 10.1128/JCM.01479-12
Egli A, Osthoff M, Goldenberger D, Halter J, Schaub S, Steiger J, et al. Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF) directly from positive blood culture flasks allows rapid identification of bloodstream infections in immunosuppressed hosts. Transpl Infect Dis. 2015;17(3):481-7. doi: 10.1111/tid.12373
Jo SJ, Park KG, Han K, Park DJ, Park YJ. Direct Identification and Antimicrobial Susceptibility Testing of Bacteria From Positive Blood Culture Bottles by Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry and the Vitek 2 System. Ann Lab Med. 2016;36(2):117-23. doi: 10.3343/alm.2016.36.2.117
Lin JF, Ge MC, Liu TP, Chang SC, Lu JJ. A simple method for rapid microbial identification from positive monomicrobial blood culture bottles through matrix-assisted laser desorption ionization time-of-flight mass spectrometry. J Microbiol Immunol Infect. 2018;51(5):659-65. doi: 10.1016/j.jmii.2017.03.005
Jamal W, Saleem R, Rotimi VO. Rapid identification of pathogens directly from blood culture bottles by Bruker matrix-assisted laser desorption laser ionization-time of flight mass spectrometry versus routine methods. Diagn Microbiol Infect Dis. 2013;76(4):404-8. doi: 10.1016/j.diagmicrobio.2013.04.013
Wu S, Xu J, Qiu C, Xu L, Chen Q, Wang X. Direct antimicrobial susceptibility tests of bacteria and yeasts from positive blood cultures by using serum separator gel tubes and MALDI-TOF MS. J Microbiol Methods. 2019;157:16-20. doi: 10.1016/j.mimet.2018.12.011
F. Whiting P, W.S. Rutjes A, E. Westwood M, Mallett S, J. Deeks J, B. Reitsma J, et al. QUADAS-2: A Revised Tool for the Quality Assessment of Diagnostic Accuracy Studies. Annals of Internal Medicine [Internet]. 2011; doi: 10.7326/0003-4819-155-8-201110180-00009.
Zhou C, Hu B, Zhang X, Huang S, Shan Y, Ye X. The value of matrix-assisted laser desorption/ionization time-of-flight mass spectrometry in identifying clinically relevant bacteria: a comparison with automated microbiology system. J Thorac Dis. 2014;6(5):545-52. doi: 10.3978/j.issn.2072-1439.2014.02.21
Maldonado Natalia, Robledo Carlos, Robledo Jaime. La espectrometría de masas MALDI-TOF en el laboratorio de microbiología clínica. Infectio [Internet]. 2018[citado el 12 de diciembre de 2022];22(1):35-45. Disponible en: http://www.scielo.org.co/pdf/inf/v22n1/0123-9392-inf-22-01-00035.pdf
Rodríguez-Sánchez B, Cercenado E, Coste AT, Greub G. Review of the impact of MALDI-TOF MS in public health and hospital hygiene, 2018. Euro Surveill. 2019;24(4). doi: 10.2807/1560-7917.ES.2019.24.4.1800193
Clark AE, Kaleta EJ, Arora A, Wolk DM. Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry: a Fundamental Shift in the Routine Practice of Clinical Microbiology. Clin Microbiol Rev. 2013;26(3):547-603. doi: 10.1128/CMR.00072-12
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Derechos de autor 2023 Carolina Cucho-Espinoza, Jean Meneses-Claudio, Margaret Condori-Zevallos, Brian Meneses-Claudio
Esta obra está bajo una licencia internacional Creative Commons Atribución 4.0.